API Reference
This page contains auto-generated API reference documentation [1].
- jax_dna
- jax_dna._version
- jax_dna.energy
- jax_dna.energy.base
- jax_dna.energy.configuration
- jax_dna.energy.dna1
- jax_dna.energy.dna1.base_functions
- jax_dna.energy.dna1.base_smoothing_functions
- jax_dna.energy.dna1.bonded_excluded_volume
- jax_dna.energy.dna1.coaxial_stacking
- jax_dna.energy.dna1.cross_stacking
- jax_dna.energy.dna1.expected_hydrogen_bonding
- jax_dna.energy.dna1.expected_stacking
- jax_dna.energy.dna1.fene
- jax_dna.energy.dna1.hydrogen_bonding
- jax_dna.energy.dna1.interactions
- jax_dna.energy.dna1.nucleotide
- jax_dna.energy.dna1.stacking
- jax_dna.energy.dna1.unbonded_excluded_volume
- jax_dna.energy.dna2
- jax_dna.energy.na1
- jax_dna.energy.na1.bonded_excluded_volume
- jax_dna.energy.na1.coaxial_stacking
- jax_dna.energy.na1.cross_stacking
- jax_dna.energy.na1.debye
- jax_dna.energy.na1.fene
- jax_dna.energy.na1.hydrogen_bonding
- jax_dna.energy.na1.nucleotide
- jax_dna.energy.na1.stacking
- jax_dna.energy.na1.unbonded_excluded_volume
- jax_dna.energy.na1.utils
- jax_dna.energy.potentials
- jax_dna.energy.rna2
- jax_dna.energy.utils
- jax_dna.gradient_estimators
- jax_dna.input
- jax_dna.losses
- jax_dna.observables
- jax_dna.optimization
- jax_dna.simulators
- jax_dna.ui
- jax_dna.utils