jax_dna.utils.constants

Constants for the oxDNA model.

Attributes

`DNA_ALPHA`
`RNA_ALPHA`
`N_NT`
`NUCLEOTIDES_IDX`
`BP_TYPES`
`N_BP_TYPES`
`N_NT_PER_BP`
`BP_IDXS`
`BP_IDX_MAP`
`DEFAULT_TEMP`
`TWO_DIMENSIONS`

Module Contents

jax_dna.utils.constants.DNA_ALPHA = 'ACGT'

jax_dna.utils.constants.RNA_ALPHA = 'ACGU'

jax_dna.utils.constants.N_NT = 4

jax_dna.utils.constants.NUCLEOTIDES_IDX: dict[str, int]

jax_dna.utils.constants.BP_TYPES = ['AT', 'TA', 'GC', 'CG']

jax_dna.utils.constants.N_BP_TYPES = 4

jax_dna.utils.constants.N_NT_PER_BP = 2

jax_dna.utils.constants.BP_IDXS

jax_dna.utils.constants.BP_IDX_MAP

jax_dna.utils.constants.DEFAULT_TEMP = 296.15

jax_dna.utils.constants.TWO_DIMENSIONS = 2