jax_dna.utils.types

Common types used in the package.

Attributes

PathOrStr

Scalar

Vector3D

Vector4D

Arr_N

Arr_Nucleotide

Arr_Nucleotide_Int

Arr_Nucleotide_2

Arr_Nucleotide_2_Int

Arr_Nucleotide_3

Arr_Nucleotide_4

Arr_Nucleotide_15

Arr_Bonded_Neighbors

Arr_Unbonded_Neighbors

Arr_Bonded_Neighbors_2

Arr_Unbonded_Neighbors_2

Arr_States

Arr_States_3

ARR_OR_SCALAR

Arr_Unpaired

Arr_Unpaired_Pseq

Arr_Bp

Arr_Bp_Pseq

Discrete_Sequence

Probabilistic_Sequence

Sequence

MetaData

Grads

Params

PyTree

SimulatorActorOutput

Classes

oxDNAFormat

oxDNA file format.

oxDNASimulatorType

oxDNA simulator type.

oxDNAModelHType

oxDNA model.h file type.

Module Contents

class jax_dna.utils.types.oxDNAFormat(*args, **kwds)[source]

Bases: enum.Enum

oxDNA file format.

CLASSIC = 1
NEW = 2
class jax_dna.utils.types.oxDNASimulatorType(*args, **kwds)[source]

Bases: enum.Enum

oxDNA simulator type.

DNA1 = 1
DNA2 = 2
class jax_dna.utils.types.oxDNAModelHType(*args, **kwds)[source]

Bases: enum.Enum

oxDNA model.h file type.

INTEGER = 1
FLOAT = 2
STRING = 3
jax_dna.utils.types.PathOrStr
jax_dna.utils.types.Scalar
jax_dna.utils.types.Vector3D
jax_dna.utils.types.Vector4D
jax_dna.utils.types.Arr_N
jax_dna.utils.types.Arr_Nucleotide
jax_dna.utils.types.Arr_Nucleotide_Int
jax_dna.utils.types.Arr_Nucleotide_2
jax_dna.utils.types.Arr_Nucleotide_2_Int
jax_dna.utils.types.Arr_Nucleotide_3
jax_dna.utils.types.Arr_Nucleotide_4
jax_dna.utils.types.Arr_Nucleotide_15
jax_dna.utils.types.Arr_Bonded_Neighbors
jax_dna.utils.types.Arr_Unbonded_Neighbors
jax_dna.utils.types.Arr_Bonded_Neighbors_2
jax_dna.utils.types.Arr_Unbonded_Neighbors_2
jax_dna.utils.types.Arr_States
jax_dna.utils.types.Arr_States_3
jax_dna.utils.types.ARR_OR_SCALAR
jax_dna.utils.types.Arr_Unpaired
jax_dna.utils.types.Arr_Unpaired_Pseq
jax_dna.utils.types.Arr_Bp
jax_dna.utils.types.Arr_Bp_Pseq
jax_dna.utils.types.Discrete_Sequence
jax_dna.utils.types.Probabilistic_Sequence
jax_dna.utils.types.Sequence
jax_dna.utils.types.MetaData
jax_dna.utils.types.Grads
jax_dna.utils.types.Params
jax_dna.utils.types.PyTree
jax_dna.utils.types.SimulatorActorOutput